Prof. Dr. Marc Thilo Figge
Phone: +49 3641 532-1416 Phone: +49 3641 532-2416 thilo.figge@leibniz-hki.de www.leibniz-hki.de
Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute (HKI)
Applied Systems Biology
Doctoral researchers
Jaime David Acosta España
Surface proteins of Lichtheimia corymbifera as virulence determinants
Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute (HKI)
Jena Microbial Resource Collection
Parastoo Akbari Moghaddam
parastoo.akbarimoghaddam@hki-jena.de
Quantitative Analysis of Microbial Dynamics in Organ-on-Chip Models
Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute (HKI)
Applied Systems Biology
Naim Al-Zaben
Quantitative Analysis of Intercellular Communication from Live Cell Imaging
Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute (HKI)
Applied Systems Biology
Dr. rer. nat. Robert Altwasser
Gene regulatory network inference in human pathogenic fungi
Dr. rer. nat. Ivan Beliaev
Automated tracking and characterization of cell dynamics for classifier models (BLOODi)
Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute (HKI)
Applied Systems Biology
Dr. rer. nat. Susanne Brandes
Automated Analysis of Dynamic Properties in Biological Systems from Image Data
Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute (HKI)
Applied Systems Biology
Ya-Fan Chen
Development of a semantic knowledge base for digitized antimicrobial biomaterials
Beatriz Cristóvão
Beatriz.Cristovao@leibniz-hki.de
Unravelling the impact of interferon-immunotherapy on epithelial resistance to Candida albicans translocation and dissemination
Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute (HKI)
Junior Research Group Adaptive Pathogenicity Strategies
Martina Graf
Detection of Low Microbial Content in Microfluidic Droplets through Scattered Light Imaging
Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute (HKI)
Bio Pilot Plant
Stefan Hoffmann
Quantitative Analysis of Microbial Dynamics in Organ-on-Chip Models
Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute (HKI)
Applied Systems Biology
Simranpreet Kaur
simranpreet.kaur@leibniz-hki.de
Establishment of lung-on-chip model for the interaction of Lichthemia corymbifera with professional phagocytes of the innate immunity
Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute (HKI)
Jena Microbial Resource Collection
Dr. rer. nat. Kaswara Kraibooj
Quantitative and automated analysis of microscopic images on phagocyte-fungus interactions
Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute (HKI)
Applied Systems Biology
Dr. rer. nat. Alessandra Marolda
Characterizing innate immune cell activation by fungal pathogens using Live Cell Imaging
Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute (HKI)
Applied Systems Biology
Dr. rer. nat. Mohammad Mirhakkak
Integration of host, pathogen and microbiome -omics data in healthy and disease states
Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute (HKI)
Applied Systems Biology
Dr. rer. nat. Johannes Pollmächer
Individual-based Modeling and Predictive Simulation of Fungal Infection Dynamics
Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute (HKI)
Applied Systems Biology
Jan-Philipp Prätorius
jan-philipp.praetorius@jsmc.info
Automated analysis of microscopic image data of hostpathogen interactions
Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute (HKI)
Applied Systems Biology
Paul Rudolph
Spatiotemporal Modeling and Simulation of Fungal Infection Processes
Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute (HKI)
Applied Systems Biology
Christoph Saffer
Spatio-temporal modeling of biological processes in organ-on-chip models
Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute (HKI)
Applied Systems Biology
Arjun Sakar
Automated Processing of Biomedical Images in Infection Research
Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute (HKI)
Applied Systems Biology
Dr. rer. nat. Sandra Timme
Agent-based modeling of the spatio-temporal interaction between immune cells and human-pathogenic fungi
Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute (HKI)
Applied Systems Biology
Dr. rer. nat. Wolfgang Vivas
Modulation of Dendritic Cell Function by the fungal Quorum Sensing Molecule Farnesol
Mounir Zerdani
Quantitative characterization of antimicrobial biomaterials by automated analysis workflows using JIPipe
Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute (HKI)
Applied Systems Biology
Gaukhar Zhurgenbayeva
gaukhar.zhurgenbayeva@jsmc.info
Organ-on-chip: quantitative imaging of microbial dynamics
Friedrich Schiller University
Superresolution Microscopy